SNP Detail For rs12022722
1.Mapping Information
Human SNP ID rs12022722
Human chromosome chr1
Human SNP position 219477791
Pig chromosome chr10
Pig SNP position 11282522
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue/subcutaneous adipose tissue ratio
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region1q41
Chromosome idchr1
Chromosome position219477791
Reported geneLYPLAL1
Mapped geneLOC102723886
Upstream gene id
Downstream gene id
SNP gene ids102723886
Upstream gene distance
Downstream gene distance
SNP risk allelers12022722-T
SNPsrs12022722
Merged0
SNP id current12022722
Contextregulatory_region_variant
Intergenic0
Allele frequency0.47
P value0.000002
Pvalue mlog5.69897000433601
P value text(women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral:subcutaneous adipose tissue ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004767
Study accessionGCST001524