SNP Detail For rs11989782
1.Mapping Information
Human SNP ID rs11989782
Human chromosome chr8
Human SNP position 120682410
Pig chromosome chr4
Pig SNP position 19432584
2.Annotation Information
PubMed ID20208534
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20208534
StudyCommon variants at 5q22 associate with pediatric eosinophilic esophagitis.
Disease/TraitEosinophilic esophagitis (pediatric)
Initial sample181 European ancestry cases, 1,974 European ancestry controls
Replication sample170 European ancestry cases, 1,130 European ancestry controls
Region8q24.12
Chromosome idchr8
Chromosome position120682410
Reported geneNR
Mapped geneSNTB1
Upstream gene id
Downstream gene id
SNP gene ids6641
Upstream gene distance
Downstream gene distance
SNP risk allelers11989782-A
SNPsrs11989782
Merged0
SNP id current11989782
Contextintron_variant
Intergenic0
Allele frequency0.23
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.53
%95 Ci[1.21-1.93]
PlatformIllumina [~ 550000]
CNVN
Mapped traiteosinophilic esophagitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004232
Study accessionGCST000620