SNP Detail For rs11988997
1.Mapping Information
Human SNP ID rs11988997
Human chromosome chr8
Human SNP position 118753955
Pig chromosome chr4
Pig SNP position 21230762
2.Annotation Information
PubMed ID23143602
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23143602
StudyCommon genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.
Disease/TraitPancreatitis
Initial sample676 European ancestry cases, 4,507 European ancestry controls
Replication sample910 European ancestry cases, 4,170 European ancestry controls
Region8q24.12
Chromosome idchr8
Chromosome position118753955
Reported geneNR
Mapped geneSAMD12-AS1 - RPS26P35
Upstream gene id552860
Downstream gene id441377
SNP gene ids
Upstream gene distance27888
Downstream gene distance7819
SNP risk allelers11988997-T
SNPsrs11988997
Merged0
SNP id current11988997
Contextintron_variant
Intergenic1
Allele frequency0.071
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.359
%95 Ci[1.21-1.50]
PlatformIllumina [625739]
CNVN
Mapped traitpancreatitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000278
Study accessionGCST001741