Human SNP ID | rs11988997 |
---|---|
Human chromosome | chr8 |
Human SNP position | 118753955 |
Pig chromosome | chr4 |
Pig SNP position | 21230762 |
PubMed ID | 23143602 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23143602 |
Study | Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis. |
Disease/Trait | Pancreatitis |
Initial sample | 676 European ancestry cases, 4,507 European ancestry controls |
Replication sample | 910 European ancestry cases, 4,170 European ancestry controls |
Region | 8q24.12 |
Chromosome id | chr8 |
Chromosome position | 118753955 |
Reported gene | NR |
Mapped gene | SAMD12-AS1 - RPS26P35 |
Upstream gene id | 552860 |
Downstream gene id | 441377 |
SNP gene ids | |
Upstream gene distance | 27888 |
Downstream gene distance | 7819 |
SNP risk allele | rs11988997-T |
SNPs | rs11988997 |
Merged | 0 |
SNP id current | 11988997 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.071 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.359 |
%95 Ci | [1.21-1.50] |
Platform | Illumina [625739] |
CNV | N |
Mapped trait | pancreatitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000278 |
Study accession | GCST001741 |