Human SNP ID | rs11985951 |
---|---|
Human chromosome | chr8 |
Human SNP position | 20734998 |
Pig chromosome | chr14 |
Pig SNP position | 5201682 |
PubMed ID | 24700089 |
---|---|
Journal | J Med Virol |
Link | www.ncbi.nlm.nih.gov/pubmed/24700089 |
Study | Genome-wide association study of HPV-associated cervical cancer in Japanese women. |
Disease/Trait | Cervical cancer |
Initial sample | 226 Japanese ancestry cases, 186 Japanese ancestry controls |
Replication sample | NA |
Region | 8p21.3 |
Chromosome id | chr8 |
Chromosome position | 20734998 |
Reported gene | intergenic |
Mapped gene | LOC105379398 - LOC105379315 |
Upstream gene id | 105379398 |
Downstream gene id | 105379315 |
SNP gene ids | |
Upstream gene distance | 321709 |
Downstream gene distance | 180987 |
SNP risk allele | rs11985951-T |
SNPs | rs11985951 |
Merged | 0 |
SNP id current | 11985951 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.871 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 3.36 |
%95 Ci | [1.94-5.83] |
Platform | Affymetrix [556045] |
CNV | N |
Mapped trait | cervical carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001061 |
Study accession | GCST002405 |