Human SNP ID | rs11978472 |
---|---|
Human chromosome | chr7 |
Human SNP position | 82210237 |
Pig chromosome | chr9 |
Pig SNP position | 108271453 |
PubMed ID | 23665963 |
---|---|
Journal | Inflamm Bowel Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/23665963 |
Study | Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn__s disease. |
Disease/Trait | Crohn__s disease (need for surgery) |
Initial sample | 239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years |
Replication sample | NA |
Region | 7q21.11 |
Chromosome id | chr7 |
Chromosome position | 82210237 |
Reported gene | CACNA2D1 |
Mapped gene | CACNA2D1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 781 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11978472-? |
SNPs | rs11978472 |
Merged | 0 |
SNP id current | 11978472 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.7 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 2 |
%95 Ci | [1.43-2.50] |
Platform | Illumina [483359] |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST002017 |