SNP Detail For rs11978472
1.Mapping Information
Human SNP ID rs11978472
Human chromosome chr7
Human SNP position 82210237
Pig chromosome chr9
Pig SNP position 108271453
2.Annotation Information
PubMed ID23665963
JournalInflamm Bowel Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/23665963
StudyMultidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn__s disease.
Disease/TraitCrohn__s disease (need for surgery)
Initial sample239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years
Replication sampleNA
Region7q21.11
Chromosome idchr7
Chromosome position82210237
Reported geneCACNA2D1
Mapped geneCACNA2D1
Upstream gene id
Downstream gene id
SNP gene ids781
Upstream gene distance
Downstream gene distance
SNP risk allelers11978472-?
SNPsrs11978472
Merged0
SNP id current11978472
Contextintron_variant
Intergenic0
Allele frequency0.7
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta2
%95 Ci[1.43-2.50]
PlatformIllumina [483359]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST002017