Human SNP ID | rs11975235 |
---|---|
Human chromosome | chr7 |
Human SNP position | 32149928 |
Pig chromosome | chr18 |
Pig SNP position | 45103059 |
PubMed ID | 23509613 |
---|---|
Journal | Autoimmune Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/23509613 |
Study | Genome-wide association study of antiphospholipid antibodies. |
Disease/Trait | Presence of antiphospholipid antibodies |
Initial sample | 183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI |
Replication sample | NA |
Region | 7p14.3 |
Chromosome id | chr7 |
Chromosome position | 32149928 |
Reported gene | PDE1C |
Mapped gene | PDE1C |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5137 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11975235-? |
SNPs | rs11975235 |
Merged | 0 |
SNP id current | 11975235 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4843 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (anti-B2 GPI) |
Or beta | 2.139 |
%95 Ci | [NR] |
Platform | Affymetrix [906600] |
CNV | N |
Mapped trait | antiphospholipid antibody measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005200 |
Study accession | GCST001872 |