SNP Detail For rs11975235
1.Mapping Information
Human SNP ID rs11975235
Human chromosome chr7
Human SNP position 32149928
Pig chromosome chr18
Pig SNP position 45103059
2.Annotation Information
PubMed ID23509613
JournalAutoimmune Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/23509613
StudyGenome-wide association study of antiphospholipid antibodies.
Disease/TraitPresence of antiphospholipid antibodies
Initial sample183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI
Replication sampleNA
Region7p14.3
Chromosome idchr7
Chromosome position32149928
Reported genePDE1C
Mapped genePDE1C
Upstream gene id
Downstream gene id
SNP gene ids5137
Upstream gene distance
Downstream gene distance
SNP risk allelers11975235-?
SNPsrs11975235
Merged0
SNP id current11975235
Contextintron_variant
Intergenic0
Allele frequency0.4843
P value0.000003
Pvalue mlog5.52287874528033
P value text(anti-B2 GPI)
Or beta2.139
%95 Ci[NR]
PlatformAffymetrix [906600]
CNVN
Mapped traitantiphospholipid antibody measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005200
Study accessionGCST001872