SNP Detail For rs11966072
1.Mapping Information
Human SNP ID rs11966072
Human chromosome chr6
Human SNP position 109313625
Pig chromosome chr1
Pig SNP position 84667816
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular hemoglobin
Initial sampleUp to 14,362 Japanese ancestry individuals
Replication sampleNA
Region6q21
Chromosome idchr6
Chromosome position109313625
Reported geneC6orf182, CD164
Mapped geneCCDC162P - LOC101927538
Upstream gene id221262
Downstream gene id101927538
SNP gene ids
Upstream gene distance5405
Downstream gene distance20574
SNP risk allelers11966072-G
SNPsrs11966072
Merged0
SNP id current11966072
Contextintron_variant
Intergenic1
Allele frequency0.1
P value0.00000001
Pvalue mlog8
P value text
Or beta0.111
%95 Ci[0.072-0.15] unit increase
PlatformIllumina [561583]
CNVN
Mapped traithemoglobin measurement, mean corpuscular hemoglobin
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527
Study accessionGCST000587
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular volume
Initial sample14,364 Japanese ancestry individuals
Replication sampleNA
Region6q21
Chromosome idchr6
Chromosome position109313625
Reported geneC6orf182, CD164
Mapped geneCCDC162P - LOC101927538
Upstream gene id221262
Downstream gene id101927538
SNP gene ids
Upstream gene distance5405
Downstream gene distance20574
SNP risk allelers11966072-G
SNPsrs11966072
Merged0
SNP id current11966072
Contextintron_variant
Intergenic1
Allele frequency0.1
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta0.11
%95 Ci[0.071-0.149] unit increase
PlatformIllumina [561583]
CNVN
Mapped traitmean corpuscular volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004526
Study accessionGCST000585
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitRed blood cell count
Initial sample14,392 Japanese ancestry individuals
Replication sampleNA
Region6q21
Chromosome idchr6
Chromosome position109313625
Reported geneC6orf182, CD164
Mapped geneCCDC162P - LOC101927538
Upstream gene id221262
Downstream gene id101927538
SNP gene ids
Upstream gene distance5405
Downstream gene distance20574
SNP risk allelers11966072-G
SNPsrs11966072
Merged0
SNP id current11966072
Contextintron_variant
Intergenic1
Allele frequency0.1
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta0.114
%95 Ci[0.075-0.153] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traiterythrocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004305
Study accessionGCST000588