Human SNP ID | rs11966072 |
---|---|
Human chromosome | chr6 |
Human SNP position | 109313625 |
Pig chromosome | chr1 |
Pig SNP position | 84667816 |
PubMed ID | 20139978 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular hemoglobin |
Initial sample | Up to 14,362 Japanese ancestry individuals |
Replication sample | NA |
Region | 6q21 |
Chromosome id | chr6 |
Chromosome position | 109313625 |
Reported gene | C6orf182, CD164 |
Mapped gene | CCDC162P - LOC101927538 |
Upstream gene id | 221262 |
Downstream gene id | 101927538 |
SNP gene ids | |
Upstream gene distance | 5405 |
Downstream gene distance | 20574 |
SNP risk allele | rs11966072-G |
SNPs | rs11966072 |
Merged | 0 |
SNP id current | 11966072 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.111 |
%95 Ci | [0.072-0.15] unit increase |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | hemoglobin measurement, mean corpuscular hemoglobin |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527 |
Study accession | GCST000587 |
PubMed ID | 20139978 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular volume |
Initial sample | 14,364 Japanese ancestry individuals |
Replication sample | NA |
Region | 6q21 |
Chromosome id | chr6 |
Chromosome position | 109313625 |
Reported gene | C6orf182, CD164 |
Mapped gene | CCDC162P - LOC101927538 |
Upstream gene id | 221262 |
Downstream gene id | 101927538 |
SNP gene ids | |
Upstream gene distance | 5405 |
Downstream gene distance | 20574 |
SNP risk allele | rs11966072-G |
SNPs | rs11966072 |
Merged | 0 |
SNP id current | 11966072 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.071-0.149] unit increase |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | mean corpuscular volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004526 |
Study accession | GCST000585 |
PubMed ID | 20139978 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Red blood cell count |
Initial sample | 14,392 Japanese ancestry individuals |
Replication sample | NA |
Region | 6q21 |
Chromosome id | chr6 |
Chromosome position | 109313625 |
Reported gene | C6orf182, CD164 |
Mapped gene | CCDC162P - LOC101927538 |
Upstream gene id | 221262 |
Downstream gene id | 101927538 |
SNP gene ids | |
Upstream gene distance | 5405 |
Downstream gene distance | 20574 |
SNP risk allele | rs11966072-G |
SNPs | rs11966072 |
Merged | 0 |
SNP id current | 11966072 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 0.114 |
%95 Ci | [0.075-0.153] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | erythrocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004305 |
Study accession | GCST000588 |