SNP Detail For rs11950562
1.Mapping Information
Human SNP ID rs11950562
Human chromosome chr5
Human SNP position 132316836
Pig chromosome chr2
Pig SNP position 140020553
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position132316836
Reported geneSLC22A4
Mapped geneSLC22A4, LOC553103
Upstream gene id
Downstream gene id
SNP gene ids6583, 553103
Upstream gene distance
Downstream gene distance
SNP risk allelers11950562-A
SNPsrs11950562
Merged0
SNP id current11950562
Contextintron_variant
Intergenic0
Allele frequency0.52
P value2E-41
Pvalue mlog40.698970004336
P value text(isovalerylcarnitine)
Or beta0.036
%95 Ci[0.03-0.042] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position132316836
Reported geneSLC22A4
Mapped geneSLC22A4, LOC553103
Upstream gene id
Downstream gene id
SNP gene ids6583, 553103
Upstream gene distance
Downstream gene distance
SNP risk allelers11950562-A
SNPsrs11950562
Merged0
SNP id current11950562
Contextintron_variant
Intergenic0
Allele frequency0.53
P value0.00000000007
Pvalue mlog10.1549019599857
P value text(homostachydrine)
Or beta0.03
%95 Ci[0.020-0.040] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443