SNP Detail For rs11949289
1.Mapping Information
Human SNP ID rs11949289
Human chromosome chr5
Human SNP position 28340066
Pig chromosome chr16
Pig SNP position 15977425
2.Annotation Information
PubMed ID22041458
JournalPsychol Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22041458
StudyPharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.
Disease/TraitResponse to anti-depressant treatment in major depressive disorder
Initial sample1,151 European ancestry cases, 288 African American cases
Replication sampleNA
Region5p14.1
Chromosome idchr5
Chromosome position28340066
Reported geneintergenic
Mapped geneLOC105374698 - LOC105374701
Upstream gene id105374698
Downstream gene id105374701
SNP gene ids
Upstream gene distance52303
Downstream gene distance208340
SNP risk allelers11949289-T
SNPsrs11949289
Merged0
SNP id current11949289
Contextintergenic_variant
Intergenic1
Allele frequency0.42
P value0.0000002
Pvalue mlog6.69897000433601
P value text(Venlafaxine, Dizziness)
Or beta
%95 Ci
PlatformAffymetrix [421789]
CNVN
Mapped traitresponse to venlafaxine, antidepressant-induced dizziness, response to antidepressant
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006328, http://www.ebi.ac.uk/efo/EFO_0006321, http://purl.obolibrary.org/obo/GO_0036276
Study accessionGCST001308