Human SNP ID | rs11949289 |
---|---|
Human chromosome | chr5 |
Human SNP position | 28340066 |
Pig chromosome | chr16 |
Pig SNP position | 15977425 |
PubMed ID | 22041458 |
---|---|
Journal | Psychol Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22041458 |
Study | Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. |
Disease/Trait | Response to anti-depressant treatment in major depressive disorder |
Initial sample | 1,151 European ancestry cases, 288 African American cases |
Replication sample | NA |
Region | 5p14.1 |
Chromosome id | chr5 |
Chromosome position | 28340066 |
Reported gene | intergenic |
Mapped gene | LOC105374698 - LOC105374701 |
Upstream gene id | 105374698 |
Downstream gene id | 105374701 |
SNP gene ids | |
Upstream gene distance | 52303 |
Downstream gene distance | 208340 |
SNP risk allele | rs11949289-T |
SNPs | rs11949289 |
Merged | 0 |
SNP id current | 11949289 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.42 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (Venlafaxine, Dizziness) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [421789] |
CNV | N |
Mapped trait | response to venlafaxine, antidepressant-induced dizziness, response to antidepressant |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006328, http://www.ebi.ac.uk/efo/EFO_0006321, http://purl.obolibrary.org/obo/GO_0036276 |
Study accession | GCST001308 |