SNP Detail For rs11924705
1.Mapping Information
Human SNP ID rs11924705
Human chromosome chr3
Human SNP position 162443828
Pig chromosome chr13
Pig SNP position 110455119
2.Annotation Information
PubMed ID21626137
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21626137
StudyTwo-marker association tests yield new disease associations for coronary artery disease and hypertension.
Disease/TraitCoronary heart disease
Initial sample~2,000 European ancestry cases, ~3,000 European ancestry controls
Replication sampleNA
Region3q26.1
Chromosome idchr3;3
Chromosome position162443828;162449608
Reported geneintergenic
Mapped geneOTOL1 - LINC01192; OTOL1 - LINC01192
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers11924705-C; rs6789378-A
SNPsrs11924705; rs6789378
Merged0
SNP id current
Contextintergenic_variant; intergenic_variant
Intergenic
Allele frequencyNR
P value0.00000000000004
Pvalue mlog13.397940008672
P value text(Coronary artery disease)
Or beta
%95 Ci
PlatformAffymetrix [407576]
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST001084