Human SNP ID | rs1192419 |
---|---|
Human chromosome | chr1 |
Human SNP position | 91614502 |
Pig chromosome | chr4 |
Pig SNP position | 137011174 |
PubMed ID | 25631615 |
---|---|
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic disc area |
Initial sample | 15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals |
Replication sample | 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals |
Region | 1p22.1 |
Chromosome id | chr1 |
Chromosome position | 91614502 |
Reported gene | CDC7, TGFBR3 |
Mapped gene | RPL39P13 - HSP90B3P |
Upstream gene id | 100130802 |
Downstream gene id | 343477 |
SNP gene ids | |
Upstream gene distance | 13998 |
Downstream gene distance | 28016 |
SNP risk allele | rs1192419-A |
SNPs | rs1192419 |
Merged | 0 |
SNP id current | 1192419 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.18 |
P value | 8E-56 |
Pvalue mlog | 55.096910013008 |
P value text | |
Or beta | 0.087 |
%95 Ci | [0.075-0.099] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006937 |
Study accession | GCST002765 |
PubMed ID | 25631615 |
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic disc area |
Initial sample | 15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals |
Replication sample | 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals |
Region | 1p22.1 |
Chromosome id | chr1 |
Chromosome position | 91614502 |
Reported gene | CDC7, TGFBR3 |
Mapped gene | RPL39P13 - HSP90B3P |
Upstream gene id | 100130802 |
Downstream gene id | 343477 |
SNP gene ids | |
Upstream gene distance | 13998 |
Downstream gene distance | 28016 |
SNP risk allele | rs1192419-A |
SNPs | rs1192419 |
Merged | 0 |
SNP id current | 1192419 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.18 |
P value | 4E-38 |
Pvalue mlog | 37.397940008672 |
P value text | (EA) |
Or beta | 0.085 |
%95 Ci | [0.071-0.099] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006937 |
Study accession | GCST002765 |