SNP Detail For rs1192201
1.Mapping Information
Human SNP ID rs1192201
Human chromosome chr13
Human SNP position 110154143
Pig chromosome chr11
Pig SNP position 84377764
2.Annotation Information
PubMed ID24951543
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24951543
StudyMeta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.
Disease/TraitAge-related nuclear cataracts
Initial sample2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals
Replication sampleNA
Region13q34
Chromosome idchr13
Chromosome position110154143
Reported geneCOL4A1
Mapped geneCOL4A1
Upstream gene id
Downstream gene id
SNP gene ids1282
Upstream gene distance
Downstream gene distance
SNP risk allelers1192201-G
SNPsrs1192201
Merged0
SNP id current1192201
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Fixed effect)
Or beta0.08
%95 Ci[0.041-0.119] unit decrease
PlatformIllumina [4736131] (imputed)
CNVN
Mapped traitage-related nuclear cataract
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0011142
Study accessionGCST002498