Human SNP ID | rs1192201 |
---|---|
Human chromosome | chr13 |
Human SNP position | 110154143 |
Pig chromosome | chr11 |
Pig SNP position | 84377764 |
PubMed ID | 24951543 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24951543 |
Study | Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract. |
Disease/Trait | Age-related nuclear cataracts |
Initial sample | 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals |
Replication sample | NA |
Region | 13q34 |
Chromosome id | chr13 |
Chromosome position | 110154143 |
Reported gene | COL4A1 |
Mapped gene | COL4A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1282 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1192201-G |
SNPs | rs1192201 |
Merged | 0 |
SNP id current | 1192201 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Fixed effect) |
Or beta | 0.08 |
%95 Ci | [0.041-0.119] unit decrease |
Platform | Illumina [4736131] (imputed) |
CNV | N |
Mapped trait | age-related nuclear cataract |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0011142 |
Study accession | GCST002498 |