SNP Detail For rs11920719
1.Mapping Information
Human SNP ID rs11920719
Human chromosome chr3
Human SNP position 171116770
Pig chromosome chr13
Pig SNP position 118719977
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitLDL cholesterol
Initial sample7,565 African American individuals
Replication sample3,789 African American and Afro-Caribbean individuals
Region3q26.2
Chromosome idchr3
Chromosome position171116770
Reported geneTNIK
Mapped geneLOC105374216, TNIK
Upstream gene id
Downstream gene id
SNP gene ids105374216, 23043
Upstream gene distance
Downstream gene distance
SNP risk allelers11920719-A
SNPsrs11920719
Merged0
SNP id current11920719
Contextintron_variant
Intergenic0
Allele frequency0.77
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.0973
%95 Ci[0.056-0.139] unit decrease
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST000975