Human SNP ID | rs11920719 |
---|---|
Human chromosome | chr3 |
Human SNP position | 171116770 |
Pig chromosome | chr13 |
Pig SNP position | 118719977 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | LDL cholesterol |
Initial sample | 7,565 African American individuals |
Replication sample | 3,789 African American and Afro-Caribbean individuals |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 171116770 |
Reported gene | TNIK |
Mapped gene | LOC105374216, TNIK |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374216, 23043 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11920719-A |
SNPs | rs11920719 |
Merged | 0 |
SNP id current | 11920719 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.77 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.0973 |
%95 Ci | [0.056-0.139] unit decrease |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST000975 |