SNP Detail For rs11915082
1.Mapping Information
Human SNP ID rs11915082
Human chromosome chr3
Human SNP position 196082268
Pig chromosome chr13
Pig SNP position 143408289
2.Annotation Information
PubMed ID19862010
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19862010
StudyMultiple loci influence erythrocyte phenotypes in the CHARGE Consortium.
Disease/TraitMean corpuscular hemoglobin
Initial sample24,167 European ancestry individuals
Replication sample9,456 European ancestry individuals
Region3q29
Chromosome idchr3
Chromosome position196082268
Reported geneTFRC
Mapped geneTFRC - LINC00885
Upstream gene id7037
Downstream gene id401109
SNP gene ids
Upstream gene distance107
Downstream gene distance60368
SNP risk allelers11915082-A
SNPsrs11915082
Merged0
SNP id current11915082
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000000000008
Pvalue mlog12.096910013008
P value text
Or beta0
%95 Ci[0.003-0.005] pg increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitmean corpuscular hemoglobin
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004527
Study accessionGCST000504