SNP Detail For rs11910494
1.Mapping Information
Human SNP ID rs11910494
Human chromosome chr21
Human SNP position 31923801
Pig chromosome chr13
Pig SNP position 205919907
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region21q22.11
Chromosome idchr21
Chromosome position31923801
Reported geneNR
Mapped geneHUNK
Upstream gene id
Downstream gene id
SNP gene ids30811
Upstream gene distance
Downstream gene distance
SNP risk allelers11910494-G
SNPsrs11910494
Merged0
SNP id current11910494
Contextintron_variant
Intergenic0
Allele frequency0.288747077060134
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP49)
Or beta0.1483
%95 Ci[0.083-0.213] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848