Human SNP ID | rs11894081 |
---|---|
Human chromosome | chr2 |
Human SNP position | 5523876 |
Pig chromosome | chr3 |
Pig SNP position | 138853024 |
PubMed ID | 23266558 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/23266558 |
Study | A genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population. |
Disease/Trait | Crohn__s disease |
Initial sample | 372 Japanese ancestry cases,3,389 Japanese ancestry controls |
Replication sample | Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls |
Region | 2p25.2 |
Chromosome id | chr2 |
Chromosome position | 5523876 |
Reported gene | SOX11 |
Mapped gene | LOC105373399 - LINC01248 |
Upstream gene id | 105373399 |
Downstream gene id | 102723818 |
SNP gene ids | |
Upstream gene distance | 114792 |
Downstream gene distance | 110265 |
SNP risk allele | rs11894081-T |
SNPs | rs11894081 |
Merged | 0 |
SNP id current | 11894081 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.55 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.2-1.22] |
Platform | Illumina [4929034] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001785 |