SNP Detail For rs11894081
1.Mapping Information
Human SNP ID rs11894081
Human chromosome chr2
Human SNP position 5523876
Pig chromosome chr3
Pig SNP position 138853024
2.Annotation Information
PubMed ID23266558
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/23266558
StudyA genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population.
Disease/TraitCrohn__s disease
Initial sample372 Japanese ancestry cases,3,389 Japanese ancestry controls
Replication sampleUp to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls
Region2p25.2
Chromosome idchr2
Chromosome position5523876
Reported geneSOX11
Mapped geneLOC105373399 - LINC01248
Upstream gene id105373399
Downstream gene id102723818
SNP gene ids
Upstream gene distance114792
Downstream gene distance110265
SNP risk allelers11894081-T
SNPsrs11894081
Merged0
SNP id current11894081
Contextintergenic_variant
Intergenic1
Allele frequency0.55
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.22
%95 Ci[1.2-1.22]
PlatformIllumina [4929034] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001785