Human SNP ID | rs11889862 |
---|---|
Human chromosome | chr2 |
Human SNP position | 149840634 |
Pig chromosome | chr15 |
Pig SNP position | 1686560 |
PubMed ID | 19448619 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19448619 |
Study | Loci at chromosomes 13, 19 and 20 influence age at natural menopause. |
Disease/Trait | Menopause (age at onset) |
Initial sample | 2,979 European ancestry female individuals |
Replication sample | 2,560 European ancestry female individuals |
Region | 2q23.3 |
Chromosome id | chr2 |
Chromosome position | 149840634 |
Reported gene | NR |
Mapped gene | LOC150596, LOC101929231 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 150596, 101929231 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11889862-? |
SNPs | rs11889862 |
Merged | 0 |
SNP id current | 11889862 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.36 |
%95 Ci | [0.21-0.51] years decrease |
Platform | Illumina [315418] |
CNV | N |
Mapped trait | age at menopause |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004704 |
Study accession | GCST000401 |