SNP Detail For rs11889862
1.Mapping Information
Human SNP ID rs11889862
Human chromosome chr2
Human SNP position 149840634
Pig chromosome chr15
Pig SNP position 1686560
2.Annotation Information
PubMed ID19448619
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19448619
StudyLoci at chromosomes 13, 19 and 20 influence age at natural menopause.
Disease/TraitMenopause (age at onset)
Initial sample2,979 European ancestry female individuals
Replication sample2,560 European ancestry female individuals
Region2q23.3
Chromosome idchr2
Chromosome position149840634
Reported geneNR
Mapped geneLOC150596, LOC101929231
Upstream gene id
Downstream gene id
SNP gene ids150596, 101929231
Upstream gene distance
Downstream gene distance
SNP risk allelers11889862-?
SNPsrs11889862
Merged0
SNP id current11889862
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.36
%95 Ci[0.21-0.51] years decrease
PlatformIllumina [315418]
CNVN
Mapped traitage at menopause
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004704
Study accessionGCST000401