SNP Detail For rs11889798
1.Mapping Information
Human SNP ID rs11889798
Human chromosome chr2
Human SNP position 227616703
Pig chromosome chr15
Pig SNP position 142899642
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted TNF-alpha)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region2q36.3
Chromosome idchr2
Chromosome position227616703
Reported geneC2orf83, LOC729968
Mapped geneC2orf83
Upstream gene id
Downstream gene id
SNP gene ids56918
Upstream gene distance
Downstream gene distance
SNP risk allelers11889798-A
SNPsrs11889798
Merged0
SNP id current11889798
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000004
Pvalue mlog6.39794000867203
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001536