SNP Detail For rs11887534
1.Mapping Information
Human SNP ID rs11887534
Human chromosome chr2
Human SNP position 43839108
Pig chromosome chr3
Pig SNP position 102768216
2.Annotation Information
PubMed ID17632509
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/17632509
StudyA genome-wide association scan identifies the hepatic cholesterol transporter ABCG8 as a susceptibility factor for human gallstone disease.
Disease/TraitGallstones
Initial sample280 European ancestry cases, 360 European ancestry controls
Replication sample1,833 European ancestry cases, 1,035 European ancestry controls, 167 Hispanic cases, 167 Hispanic controls
Region2p21
Chromosome idchr2
Chromosome position43839108
Reported geneABCG8
Mapped geneABCG8
Upstream gene id
Downstream gene id
SNP gene ids64241
Upstream gene distance
Downstream gene distance
SNP risk allelers11887534-C
SNPsrs11887534
Merged0
SNP id current11887534
Contextmissense_variant
Intergenic0
Allele frequency0.1
P value0.00000000000001
Pvalue mlog14
P value text
Or beta2.2
%95 Ci[1.80-2.60]
PlatformAffymetrix [382492]
CNVN
Mapped traitgallstones
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004210
Study accessionGCST000055