SNP Detail For rs11885103
1.Mapping Information
Human SNP ID rs11885103
Human chromosome chr2
Human SNP position 594366
Pig chromosome chr3
Pig SNP position 141980440
2.Annotation Information
PubMed ID25130324
JournalGenes Brain Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/25130324
StudyA genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl__s gyrus.
Disease/TraitHeschl__s gyrus morphology
Initial sample1,778 European ancestry individuals, 1,276 individuals
Replication sampleNA
Region2p25.3
Chromosome idchr2
Chromosome position594366
Reported geneTMEM18
Mapped geneLOC105373352 - LOC105373353
Upstream gene id105373352
Downstream gene id105373353
SNP gene ids
Upstream gene distance32384
Downstream gene distance41271
SNP risk allelers11885103-A
SNPsrs11885103
Merged0
SNP id current11885103
Contextintergenic_variant
Intergenic1
Allele frequency0.44
P value0.000002
Pvalue mlog5.69897000433601
P value text(Right HG area)
Or beta9.74
%95 Ciunit decrease
PlatformAffymetrix, Illumina [4103035] (imputed)
CNVN
Mapped traitHeschl__s gyrus morphology measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005852
Study accessionGCST002579