Human SNP ID | rs11858577 |
---|---|
Human chromosome | chr15 |
Human SNP position | 66774225 |
Pig chromosome | chr1 |
Pig SNP position | 182471349 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Subcutaneous adipose tissue |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 15q22.31 |
Chromosome id | chr15 |
Chromosome position | 66774225 |
Reported gene | SMAD6 |
Mapped gene | SMAD6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4091 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11858577-T |
SNPs | rs11858577 |
Merged | 0 |
SNP id current | 11858577 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.08 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | subcutaneous adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004766 |
Study accession | GCST001521 |