SNP Detail For rs11858577
1.Mapping Information
Human SNP ID rs11858577
Human chromosome chr15
Human SNP position 66774225
Pig chromosome chr1
Pig SNP position 182471349
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region15q22.31
Chromosome idchr15
Chromosome position66774225
Reported geneSMAD6
Mapped geneSMAD6
Upstream gene id
Downstream gene id
SNP gene ids4091
Upstream gene distance
Downstream gene distance
SNP risk allelers11858577-T
SNPsrs11858577
Merged0
SNP id current11858577
Contextintron_variant
Intergenic0
Allele frequency0.08
P value0.000009
Pvalue mlog5.04575749056067
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521