SNP Detail For rs11858486
1.Mapping Information
Human SNP ID rs11858486
Human chromosome chr15
Human SNP position 86265638
Pig chromosome chr1
Pig SNP position 214937491
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region15q25.3
Chromosome idchr15
Chromosome position86265638
Reported geneNR
Mapped geneAGBL1
Upstream gene id
Downstream gene id
SNP gene ids123624
Upstream gene distance
Downstream gene distance
SNP risk allelers11858486-?
SNPsrs11858486
Merged
SNP id current11858486
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Latino)
Or beta0.3081
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957