SNP Detail For rs11838918
1.Mapping Information
Human SNP ID rs11838918
Human chromosome chr13
Human SNP position 78836439
Pig chromosome chr11
Pig SNP position 55703720
2.Annotation Information
PubMed ID20585324
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20585324
StudyGenome-wide association study of conduct disorder symptomatology.
Disease/TraitConduct disorder (symptom count)
Initial sample872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls
Replication sampleNA
Region13q31.1
Chromosome idchr13
Chromosome position78836439
Reported geneintergenic
Mapped geneLINC00331
Upstream gene id
Downstream gene id
SNP gene ids100874126
Upstream gene distance
Downstream gene distance
SNP risk allelers11838918-C
SNPsrs11838918
Merged0
SNP id current11838918
Contextintergenic_variant
Intergenic0
Allele frequency0.022
P value0.00000001
Pvalue mlog8
P value text
Or beta0.28
%95 Ci[NR] unit increase
PlatformIllumina [948658]
CNVN
Mapped traitconduct disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004216
Study accessionGCST000713
PubMed ID20585324
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20585324
StudyGenome-wide association study of conduct disorder symptomatology.
Disease/TraitConduct disorder
Initial sample872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls
Replication sampleNA
Region13q31.1
Chromosome idchr13
Chromosome position78836439
Reported geneintergenic
Mapped geneLINC00331
Upstream gene id
Downstream gene id
SNP gene ids100874126
Upstream gene distance
Downstream gene distance
SNP risk allelers11838918-C
SNPsrs11838918
Merged0
SNP id current11838918
Contextintergenic_variant
Intergenic0
Allele frequency0.022
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.26
%95 Ci[1.61-3.18]
PlatformIllumina [948658]
CNVN
Mapped traitconduct disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004216
Study accessionGCST000714
PubMed ID20585324
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20585324
StudyGenome-wide association study of conduct disorder symptomatology.
Disease/TraitConduct disorder (symptom count)
Initial sample872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls
Replication sampleNA
Region13q31.1
Chromosome idchr13
Chromosome position78836439
Reported geneintergenic
Mapped geneLINC00331
Upstream gene id
Downstream gene id
SNP gene ids100874126
Upstream gene distance
Downstream gene distance
SNP risk allelers11838918-C
SNPsrs11838918
Merged0
SNP id current11838918
Contextintergenic_variant
Intergenic0
Allele frequency0.066
P value0.0000003
Pvalue mlog6.52287874528033
P value text(AA)
Or beta0.278
%95 Ci[NR] unit increase
PlatformIllumina [948658]
CNVN
Mapped traitconduct disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004216
Study accessionGCST000713