SNP Detail For rs11838776
1.Mapping Information
Human SNP ID rs11838776
Human chromosome chr13
Human SNP position 110388334
Pig chromosome chr11
Pig SNP position 84584310
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitCoronary artery disease
Initial sample42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls,
Replication sampleNA
Region13q34
Chromosome idchr13
Chromosome position110388334
Reported geneCOL4A1, COL4A2
Mapped geneCOL4A2
Upstream gene id
Downstream gene id
SNP gene ids1284
Upstream gene distance
Downstream gene distance
SNP risk allelers11838776-A
SNPsrs11838776
Merged
SNP id current11838776
Contextintron_variant
Intergenic0
Allele frequency0.263277
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.07
%95 Ci[1.05- 1.09]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitcoronary artery disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000378
Study accessionGCST003116