SNP Detail For rs11830157
1.Mapping Information
Human SNP ID rs11830157
Human chromosome chr12
Human SNP position 117827636
Pig chromosome chr14
Pig SNP position 36948427
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitCoronary artery disease
Initial sample42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls,
Replication sampleNA
Region12q24.23
Chromosome idchr12
Chromosome position117827636
Reported geneKSR2
Mapped geneKSR2
Upstream gene id
Downstream gene id
SNP gene ids283455
Upstream gene distance
Downstream gene distance
SNP risk allelers11830157-G
SNPsrs11830157
Merged
SNP id current11830157
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.000000002
Pvalue mlog8.69897000433601
P value text(recessive model)
Or beta1.12
%95 Ci[1.08-1.16]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitcoronary artery disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000378
Study accessionGCST003116