SNP Detail For rs11827962
1.Mapping Information
Human SNP ID rs11827962
Human chromosome chr11
Human SNP position 22291020
Pig chromosome chr2
Pig SNP position 40378645
2.Annotation Information
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region11p14.3
Chromosome idchr11
Chromosome position22291020
Reported geneANO5, SLC17A6
Mapped geneANO5 - SLC17A6
Upstream gene id203859
Downstream gene id57084
SNP gene ids
Upstream gene distance7653
Downstream gene distance47101
SNP risk allelers11827962-C
SNPsrs11827962
Merged0
SNP id current11827962
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text(5 degree of freedom test)
Or beta1.044
%95 Ci[0.94-1.15]
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877