SNP Detail For rs11820589
1.Mapping Information
Human SNP ID rs11820589
Human chromosome chr11
Human SNP position 116763146
Pig chromosome chr9
Pig SNP position 49225301
2.Annotation Information
PubMed ID21386085
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/21386085
StudyA bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.
Disease/TraitMetabolic syndrome (bivariate traits)
Initial sample22,161 European ancestry individuals
Replication sampleNA
Region11q23.3
Chromosome idchr11
Chromosome position116763146
Reported geneBUD13
Mapped geneBUD13
Upstream gene id
Downstream gene id
SNP gene ids84811
Upstream gene distance
Downstream gene distance
SNP risk allelers11820589-A
SNPsrs11820589
Merged0
SNP id current11820589
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.000000006
Pvalue mlog8.22184874961635
P value text(TG-GLUC)
Or beta0.32
%95 Ci[0.20-0.44] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitmetabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST001007