SNP Detail For rs11799420
1.Mapping Information
Human SNP ID rs11799420
Human chromosome chr1
Human SNP position 171683838
Pig chromosome chr1
Pig SNP position 182227840
2.Annotation Information
PubMed ID25625606
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25625606
StudyInvestigating the Genetics of Hippocampal Volume in Older Adults without Dementia.
Disease/TraitHippocampal atrophy
Initial sample325 European ancestry older adult individuals
Replication sampleNA
Region1q24.3
Chromosome idchr1
Chromosome position171683838
Reported geneVAMP4
Mapped geneRPL4P3
Upstream gene id
Downstream gene id
SNP gene ids391135
Upstream gene distance
Downstream gene distance
SNP risk allelers11799420-?
SNPsrs11799420
Merged0
SNP id current11799420
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix [at least 734550] (imputed)
CNVN
Mapped traithippocampal atrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005039
Study accessionGCST002760