SNP Detail For rs11796357
1.Mapping Information
Human SNP ID rs11796357
Human chromosome chrX
Human SNP position 69578860
Pig chromosome chrX
Pig SNP position 62914030
2.Annotation Information
PubMed ID23704328
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23704328
StudyGenome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.
Disease/TraitPrimary tooth development (time to first tooth eruption)
Initial sample11,118 European ancestry individuals
Replication sample
RegionXq13.1
Chromosome idchrX
Chromosome position69578860
Reported geneFAM155E, EDA
Mapped geneFAM155B - EDA
Upstream gene id27112
Downstream gene id1896
SNP gene ids
Upstream gene distance46352
Downstream gene distance37207
SNP risk allelers11796357-G
SNPsrs11796357
Merged0
SNP id current11796357
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value3E-22
Pvalue mlog21.5228787452803
P value text
Or beta0.25
%95 Ci[0.2-0.3] unit decrease
PlatformIllumina [2446724] (imputed)
CNVN
Mapped traittooth eruption
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0044691
Study accessionGCST002030
PubMed ID23704328
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23704328
StudyGenome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.
Disease/TraitPrimary tooth development (number of teeth)
Initial sample11,513 European ancestry individuals
Replication sample
RegionXq13.1
Chromosome idchrX
Chromosome position69578860
Reported geneFAM155E, EDA
Mapped geneFAM155B - EDA
Upstream gene id27112
Downstream gene id1896
SNP gene ids
Upstream gene distance46352
Downstream gene distance37207
SNP risk allelers11796357-G
SNPsrs11796357
Merged0
SNP id current11796357
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value7E-19
Pvalue mlog18.1549019599857
P value text
Or beta0.199
%95 Ci[0.16-0.24] unit increase
PlatformIllumina [2446724] (imputed)
CNVN
Mapped traitodontogenesis
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042476
Study accessionGCST002031