Human SNP ID | rs11796357 |
---|---|
Human chromosome | chrX |
Human SNP position | 69578860 |
Pig chromosome | chrX |
Pig SNP position | 62914030 |
PubMed ID | 23704328 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23704328 |
Study | Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances. |
Disease/Trait | Primary tooth development (time to first tooth eruption) |
Initial sample | 11,118 European ancestry individuals |
Replication sample | |
Region | Xq13.1 |
Chromosome id | chrX |
Chromosome position | 69578860 |
Reported gene | FAM155E, EDA |
Mapped gene | FAM155B - EDA |
Upstream gene id | 27112 |
Downstream gene id | 1896 |
SNP gene ids | |
Upstream gene distance | 46352 |
Downstream gene distance | 37207 |
SNP risk allele | rs11796357-G |
SNPs | rs11796357 |
Merged | 0 |
SNP id current | 11796357 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 3E-22 |
Pvalue mlog | 21.5228787452803 |
P value text | |
Or beta | 0.25 |
%95 Ci | [0.2-0.3] unit decrease |
Platform | Illumina [2446724] (imputed) |
CNV | N |
Mapped trait | tooth eruption |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0044691 |
Study accession | GCST002030 |
PubMed ID | 23704328 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23704328 |
Study | Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances. |
Disease/Trait | Primary tooth development (number of teeth) |
Initial sample | 11,513 European ancestry individuals |
Replication sample | |
Region | Xq13.1 |
Chromosome id | chrX |
Chromosome position | 69578860 |
Reported gene | FAM155E, EDA |
Mapped gene | FAM155B - EDA |
Upstream gene id | 27112 |
Downstream gene id | 1896 |
SNP gene ids | |
Upstream gene distance | 46352 |
Downstream gene distance | 37207 |
SNP risk allele | rs11796357-G |
SNPs | rs11796357 |
Merged | 0 |
SNP id current | 11796357 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 7E-19 |
Pvalue mlog | 18.1549019599857 |
P value text | |
Or beta | 0.199 |
%95 Ci | [0.16-0.24] unit increase |
Platform | Illumina [2446724] (imputed) |
CNV | N |
Mapped trait | odontogenesis |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0042476 |
Study accession | GCST002031 |