SNP Detail For rs11790388
1.Mapping Information
Human SNP ID rs11790388
Human chromosome chr9
Human SNP position 126978004
Pig chromosome chr1
Pig SNP position 301461794
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region9q33.3
Chromosome idchr9
Chromosome position126978004
Reported geneNR
Mapped geneRALGPS1
Upstream gene id
Downstream gene id
SNP gene ids9649
Upstream gene distance
Downstream gene distance
SNP risk allelers11790388-G
SNPsrs11790388
Merged
SNP id current11790388
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.0752687
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048