SNP Detail For rs117851058
1.Mapping Information
Human SNP ID rs117851058
Human chromosome chr19
Human SNP position 40803685
Pig chromosome chr6
Pig SNP position 44689959
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region19q13.2
Chromosome idchr19
Chromosome position40803685
Reported geneEGLN2
Mapped geneRAB4B-EGLN2, EGLN2
Upstream gene id
Downstream gene id
SNP gene ids100529264, 112398
Upstream gene distance
Downstream gene distance
SNP risk allelers117851058-A
SNPsrs117851058
Merged0
SNP id current117851058
Contextintron_variant
Intergenic0
Allele frequency0.019
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.161
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262