SNP Detail For rs11780156
1.Mapping Information
Human SNP ID rs11780156
Human chromosome chr8
Human SNP position 128182395
Pig chromosome chr4
Pig SNP position 12379129
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position128182395
Reported geneMYC, MIR1208
Mapped geneLOC105375755
Upstream gene id
Downstream gene id
SNP gene ids105375755
Upstream gene distance
Downstream gene distance
SNP risk allelers11780156-T
SNPsrs11780156
Merged0
SNP id current11780156
Contextintergenic_variant
Intergenic0
Allele frequency0.16
P value0.00000000003
Pvalue mlog10.5228787452803
P value text
Or beta1.07
%95 Ci[1.04-1.10]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937