Human SNP ID | rs11780156 |
---|---|
Human chromosome | chr8 |
Human SNP position | 128182395 |
Pig chromosome | chr4 |
Pig SNP position | 12379129 |
PubMed ID | 23535729 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 128182395 |
Reported gene | MYC, MIR1208 |
Mapped gene | LOC105375755 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105375755 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11780156-T |
SNPs | rs11780156 |
Merged | 0 |
SNP id current | 11780156 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 1.07 |
%95 Ci | [1.04-1.10] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |