SNP Detail For rs11779860
1.Mapping Information
Human SNP ID rs11779860
Human chromosome chr8
Human SNP position 97838102
Pig chromosome chr4
Pig SNP position 41993026
2.Annotation Information
PubMed ID24952745
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24952745
StudyGenetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
Disease/TraitQT interval
Initial sampleUp to 70,389 European ancestry individuals, up to 672 Orcadian individuals
Replication sampleUp to 33,316 European ancestry individuals
Region8q22.1
Chromosome idchr8
Chromosome position97838102
Reported geneLAPTM4B
Mapped geneLAPTM4B
Upstream gene id
Downstream gene id
SNP gene ids55353
Upstream gene distance
Downstream gene distance
SNP risk allelers11779860-C
SNPsrs11779860
Merged0
SNP id current11779860
Contextintron_variant
Intergenic0
Allele frequency0.47
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta0.61
%95 Ci[0.41-0.81] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST002500