SNP Detail For rs11773845
1.Mapping Information
Human SNP ID rs11773845
Human chromosome chr7
Human SNP position 116551247
Pig chromosome chr18
Pig SNP position 31755579
2.Annotation Information
PubMed ID23139255
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23139255
StudyNovel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.
Disease/TraitPR interval
Initial sample13,415 African American individuals
Replication sampleNA
Region7q31.2
Chromosome idchr7
Chromosome position116551247
Reported geneCAV1
Mapped geneCAV1
Upstream gene id
Downstream gene id
SNP gene ids857
Upstream gene distance
Downstream gene distance
SNP risk allelers11773845-A
SNPsrs11773845
Merged0
SNP id current11773845
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.000000000004
Pvalue mlog11.397940008672
P value text
Or beta2.29
%95 Ci[1.64-2.94] unit decrease
PlatformAffymetrix, Illumina [2845108] (imputed)
CNVN
Mapped traitPR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462
Study accessionGCST001735
PubMed ID25035420
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25035420
StudyIdentification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.
Disease/TraitPR interval
Initial sample6,085 Korean ancestry individuals
Replication sample7,295 Japanese ancestry individuals
Region7q31.2
Chromosome idchr7
Chromosome position116551247
Reported geneCAV1, CAV2
Mapped geneCAV1
Upstream gene id
Downstream gene id
SNP gene ids857
Upstream gene distance
Downstream gene distance
SNP risk allelers11773845-C
SNPsrs11773845
Merged0
SNP id current11773845
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.00000000000003
Pvalue mlog13.5228787452803
P value text
Or beta3.21
%95 Ci[2.39-4.03] unit increase
PlatformAffymetrix [2100000] (imputed)
CNVN
Mapped traitPR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462
Study accessionGCST002535