Human SNP ID | rs11771429 |
---|---|
Human chromosome | chr7 |
Human SNP position | 153574792 |
Pig chromosome | chr18 |
Pig SNP position | 4496840 |
PubMed ID | 24121790 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24121790 |
Study | A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus. |
Disease/Trait | Barrett__s esophagus |
Initial sample | 2,416 European ancestry cases, 3,206 European ancestry controls |
Replication sample | 759 European ancestry cases, 6,911 European ancestry controls |
Region | 7q36.2 |
Chromosome id | chr7 |
Chromosome position | 153574792 |
Reported gene | NR |
Mapped gene | LOC105375579 - LOC105375583 |
Upstream gene id | 105375579 |
Downstream gene id | 105375583 |
SNP gene ids | |
Upstream gene distance | 66455 |
Downstream gene distance | 179586 |
SNP risk allele | rs11771429-G |
SNPs | rs11771429 |
Merged | 0 |
SNP id current | 11771429 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.816 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.2195 |
%95 Ci | [1.12-1.33] |
Platform | Illumina [922031] |
CNV | N |
Mapped trait | Barrett__s esophagus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000280 |
Study accession | GCST002230 |
PubMed ID | 24121790 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24121790 |
Study | A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus. |
Disease/Trait | Digestive system disease (Barrett__s esophagus and esophageal adenocarcinoma combined) |
Initial sample | 3,928 European ancestry cases, 3,207 European ancestry controls |
Replication sample | 1,636 European ancestry cases, 6,911 European ancestry controls |
Region | 7q36.2 |
Chromosome id | chr7 |
Chromosome position | 153574792 |
Reported gene | NR |
Mapped gene | LOC105375579 - LOC105375583 |
Upstream gene id | 105375579 |
Downstream gene id | 105375583 |
SNP gene ids | |
Upstream gene distance | 66455 |
Downstream gene distance | 179586 |
SNP risk allele | rs11771429-G |
SNPs | rs11771429 |
Merged | 0 |
SNP id current | 11771429 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.816 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.1905 |
%95 Ci | [1.1-1.28] |
Platform | Illumina [922031] |
CNV | N |
Mapped trait | esophageal adenocarcinoma, digestive system disease, Barrett__s esophagus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000478, http://www.ebi.ac.uk/efo/EFO_0000405, http://www.ebi.ac.uk/efo/EFO_0000280 |
Study accession | GCST002231 |