SNP Detail For rs11770772
1.Mapping Information
Human SNP ID rs11770772
Human chromosome chr7
Human SNP position 22147462
Pig chromosome chr9
Pig SNP position 100435599
2.Annotation Information
PubMed ID26265699
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/26265699
StudyGenetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.
Disease/TraitGlucocorticoid-induced osteonecrosis (age 10 years and older)
Initial sample230 osteonecrosis cases, 1,238 treated controls
Replication sampleNA
Region7p15.3
Chromosome idchr7
Chromosome position22147462
Reported geneRAPGEF5
Mapped geneRAPGEF5
Upstream gene id
Downstream gene id
SNP gene ids9771
Upstream gene distance
Downstream gene distance
SNP risk allelers11770772-?
SNPsrs11770772
Merged
SNP id current11770772
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitresponse to glucocorticoid, osteonecrosis
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0051384, http://www.ebi.ac.uk/efo/EFO_0004259
Study accessionGCST003081