SNP Detail For rs117607728
1.Mapping Information
Human SNP ID rs117607728
Human chromosome chr10
Human SNP position 94298879
Pig chromosome chr14
Pig SNP position 115587219
2.Annotation Information
PubMed ID21685187
JournalThorax
Linkwww.ncbi.nlm.nih.gov/pubmed/21685187
StudyGenome-wide association study of smoking behaviours in patients with COPD.
Disease/TraitLifetime average cigarettes per day in chronic obstructive pulmonary disease
Initial sample3,440 European ancestry cases
Replication sampleNA
Region10q23.33
Chromosome idchr10
Chromosome position94298879
Reported genePLCE1
Mapped genePLCE1
Upstream gene id
Downstream gene id
SNP gene ids51196
Upstream gene distance
Downstream gene distance
SNP risk allelers117607728-T
SNPsrs117607728
Merged0
SNP id current117607728
Contextintron_variant
Intergenic0
Allele frequency0.02
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta0.333
%95 Ciunit increase
PlatformIllumina [~ 6300000] (imputed)
CNVN
Mapped traitchronic obstructive pulmonary disease, smoking behaviour measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005671
Study accessionGCST001112