SNP Detail For rs11759769
1.Mapping Information
Human SNP ID rs11759769
Human chromosome chr6
Human SNP position 96617336
Pig chromosome chr1
Pig SNP position 72122323
2.Annotation Information
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine
Initial sample23,285 European ancestry cases, 95,425 European ancestry controls
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position96617336
Reported geneFHL5
Mapped geneFHL5
Upstream gene id
Downstream gene id
SNP gene ids9457
Upstream gene distance
Downstream gene distance
SNP risk allelers11759769-A
SNPsrs11759769
Merged0
SNP id current11759769
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.22
P value0.00000000001
Pvalue mlog11
P value text
Or beta1.1
%95 Ci[1.07-1.13]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002081
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine without aura
Initial sample7,107 European ancestry cases, 69,427 European ancestry controls
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position96617336
Reported geneFHL5
Mapped geneFHL5
Upstream gene id
Downstream gene id
SNP gene ids9457
Upstream gene distance
Downstream gene distance
SNP risk allelers11759769-A
SNPsrs11759769
Merged0
SNP id current11759769
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.22
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.18
%95 Ci[1.13-1.24]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002078
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine - clinic-based
Initial sample5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position96617336
Reported geneFHL5
Mapped geneFHL5
Upstream gene id
Downstream gene id
SNP gene ids9457
Upstream gene distance
Downstream gene distance
SNP risk allelers11759769-A
SNPsrs11759769
Merged0
SNP id current11759769
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.22
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.16
%95 Ci[1.09-1.23]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002079