Human SNP ID | rs11759769 |
---|---|
Human chromosome | chr6 |
Human SNP position | 96617336 |
Pig chromosome | chr1 |
Pig SNP position | 72122323 |
PubMed ID | 23793025 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine |
Initial sample | 23,285 European ancestry cases, 95,425 European ancestry controls |
Replication sample | NA |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 96617336 |
Reported gene | FHL5 |
Mapped gene | FHL5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9457 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11759769-A |
SNPs | rs11759769 |
Merged | 0 |
SNP id current | 11759769 |
Context | downstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.07-1.13] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002081 |
PubMed ID | 23793025 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine without aura |
Initial sample | 7,107 European ancestry cases, 69,427 European ancestry controls |
Replication sample | NA |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 96617336 |
Reported gene | FHL5 |
Mapped gene | FHL5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9457 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11759769-A |
SNPs | rs11759769 |
Merged | 0 |
SNP id current | 11759769 |
Context | downstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.13-1.24] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002078 |
PubMed ID | 23793025 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23793025 |
Study | Genome-wide meta-analysis identifies new susceptibility loci for migraine. |
Disease/Trait | Migraine - clinic-based |
Initial sample | 5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls |
Replication sample | NA |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 96617336 |
Reported gene | FHL5 |
Mapped gene | FHL5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9457 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11759769-A |
SNPs | rs11759769 |
Merged | 0 |
SNP id current | 11759769 |
Context | downstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.09-1.23] |
Platform | Affymetrix, Illumina [~ 2300000] (imputed) |
CNV | N |
Mapped trait | migraine disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003821 |
Study accession | GCST002079 |