SNP Detail For rs117578877
1.Mapping Information
Human SNP ID rs117578877
Human chromosome chr12
Human SNP position 13528544
Pig chromosome chr5
Pig SNP position 62309220
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region12p13.1
Chromosome idchr12
Chromosome position13528544
Reported geneNR
Mapped geneLINC01559 - GRIN2B
Upstream gene id283422
Downstream gene id2904
SNP gene ids
Upstream gene distance151799
Downstream gene distance8793
SNP risk allelers117578877-T
SNPsrs117578877
Merged
SNP id current117578877
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.15
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048