SNP Detail For rs11757661
1.Mapping Information
Human SNP ID rs11757661
Human chromosome chr6
Human SNP position 88473861
Pig chromosome chr1
Pig SNP position 63455062
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region6q15
Chromosome idchr6
Chromosome position88473861
Reported geneRNGTT
Mapped geneLOC105377885 - LOC101928936
Upstream gene id105377885
Downstream gene id101928936
SNP gene ids
Upstream gene distance30948
Downstream gene distance52063
SNP risk allelers11757661-A
SNPsrs11757661
Merged0
SNP id current11757661
Contextintergenic_variant
Intergenic1
Allele frequency0.04
P value0.000008
Pvalue mlog5.09691001300805
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521