SNP Detail For rs117559033
1.Mapping Information
Human SNP ID rs117559033
Human chromosome chr16
Human SNP position 25933223
Pig chromosome chr3
Pig SNP position 21175280
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitParasitemia in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region16p12.1
Chromosome idchr16
Chromosome position25933223
Reported geneNR
Mapped geneHS3ST4
Upstream gene id
Downstream gene id
SNP gene ids9951
Upstream gene distance
Downstream gene distance
SNP risk allelers117559033-?
SNPsrs117559033
Merged0
SNP id current117559033
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitparasitemia measurement, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005528, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002282