Human SNP ID | rs11755845 |
---|---|
Human chromosome | chr6 |
Human SNP position | 43937043 |
Pig chromosome | chr7 |
Pig SNP position | 44697408 |
PubMed ID | 23408906 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23408906 |
Study | A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function. |
Disease/Trait | Thyroid hormone levels |
Initial sample | up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males |
Replication sample | NA |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 43937043 |
Reported gene | VEGFA |
Mapped gene | LINC01512 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100132354 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11755845-T |
SNPs | rs11755845 |
Merged | 0 |
SNP id current | 11755845 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.266 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | (TSH) |
Or beta | 0.065 |
%95 Ci | [0.045-0.085] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | thyroid stimulating hormone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004748 |
Study accession | GCST001856 |
PubMed ID | 23408906 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23408906 |
Study | A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function. |
Disease/Trait | Thyroid hormone levels |
Initial sample | up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males |
Replication sample | NA |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 43937043 |
Reported gene | VEGFA |
Mapped gene | LINC01512 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100132354 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11755845-T |
SNPs | rs11755845 |
Merged | 0 |
SNP id current | 11755845 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.266 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (TSH - Males) |
Or beta | 0.076 |
%95 Ci | [0.047-0.105] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | thyroid stimulating hormone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004748 |
Study accession | GCST001856 |