SNP Detail For rs11755527
1.Mapping Information
Human SNP ID rs11755527
Human chromosome chr6
Human SNP position 90248512
Pig chromosome chr1
Pig SNP position 65229579
2.Annotation Information
PubMed ID18978792
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18978792
StudyMeta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.
Disease/TraitType 1 diabetes
Initial sample3,561 European ancestry cases, 4,646 European ancestry controls
Replication sample6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families
Region6q15
Chromosome idchr6
Chromosome position90248512
Reported geneBACH2
Mapped geneBACH2
Upstream gene id
Downstream gene id
SNP gene ids60468
Upstream gene distance
Downstream gene distance
SNP risk allelers11755527-G
SNPsrs11755527
Merged0
SNP id current11755527
Contextintron_variant
Intergenic0
Allele frequency0.47
P value0.000000000005
Pvalue mlog11.3010299956639
P value text
Or beta1.13
%95 Ci[1.08-1.19]
PlatformAffymetrix [up to 335565]
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000258
PubMed ID21829393
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21829393
StudyGenome-wide association analysis of autoantibody positivity in type 1 diabetes cases.
Disease/TraitType 1 diabetes autoantibodies
Initial sample12,501 European ancestry cases
Replication sample3,598 sibling cases
Region6q15
Chromosome idchr6
Chromosome position90248512
Reported geneBACH2
Mapped geneBACH2
Upstream gene id
Downstream gene id
SNP gene ids60468
Upstream gene distance
Downstream gene distance
SNP risk allelers11755527-G
SNPsrs11755527
Merged0
SNP id current11755527
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text(T1D)
Or beta1.1
%95 Ci[NR]
PlatformAffymetrix, Illumina [NR]
CNVN
Mapped traittype I diabetes mellitus, autoantibody measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359, http://www.ebi.ac.uk/efo/EFO_0004866
Study accessionGCST001191
PubMed ID19430480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19430480
StudyGenome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.
Disease/TraitType 1 diabetes
Initial sample7,514 cases, 9,045 controls
Replication sample4,267 cases, 4,670 controls, 4,342 trios from 2,319 families
Region6q15
Chromosome idchr6
Chromosome position90248512
Reported geneBACH2
Mapped geneBACH2
Upstream gene id
Downstream gene id
SNP gene ids60468
Upstream gene distance
Downstream gene distance
SNP risk allelers11755527-?
SNPsrs11755527
Merged0
SNP id current11755527
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [841622] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000392