Human SNP ID | rs1175550 |
---|---|
Human chromosome | chr1 |
Human SNP position | 3774964 |
Pig chromosome | chr6 |
Pig SNP position | 60007155 |
PubMed ID | 23720494 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23720494 |
Study | Genome-wide association study identifies loci affecting blood copper, selenium and zinc. |
Disease/Trait | Blood trace element (Cu levels) |
Initial sample | 2,603 European ancestry individuals |
Replication sample | NA |
Region | 1p36.32 |
Chromosome id | chr1 |
Chromosome position | 3774964 |
Reported gene | CCDC27, LOC388588, KIAA0562, DFFB, LRRC47 |
Mapped gene | SMIM1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 388588 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1175550-A |
SNPs | rs1175550 |
Merged | 0 |
SNP id current | 1175550 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000005 |
Pvalue mlog | 9.30102999566398 |
P value text | |
Or beta | 0.198 |
%95 Ci | [0.14-0.26] unit decrease |
Platform | Illumina [> 2500000] (imputed) |
CNV | N |
Mapped trait | serum copper measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005267 |
Study accession | GCST002041 |