SNP Detail For rs1175550
1.Mapping Information
Human SNP ID rs1175550
Human chromosome chr1
Human SNP position 3774964
Pig chromosome chr6
Pig SNP position 60007155
2.Annotation Information
PubMed ID23720494
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23720494
StudyGenome-wide association study identifies loci affecting blood copper, selenium and zinc.
Disease/TraitBlood trace element (Cu levels)
Initial sample2,603 European ancestry individuals
Replication sampleNA
Region1p36.32
Chromosome idchr1
Chromosome position3774964
Reported geneCCDC27, LOC388588, KIAA0562, DFFB, LRRC47
Mapped geneSMIM1
Upstream gene id
Downstream gene id
SNP gene ids388588
Upstream gene distance
Downstream gene distance
SNP risk allelers1175550-A
SNPsrs1175550
Merged0
SNP id current1175550
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000005
Pvalue mlog9.30102999566398
P value text
Or beta0.198
%95 Ci[0.14-0.26] unit decrease
PlatformIllumina [> 2500000] (imputed)
CNVN
Mapped traitserum copper measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005267
Study accessionGCST002041