SNP Detail For rs11754509
1.Mapping Information
Human SNP ID rs11754509
Human chromosome chr6
Human SNP position 55608496
Pig chromosome chr7
Pig SNP position 30040297
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region6p12.1
Chromosome idchr6
Chromosome position55608496
Reported geneHMGCLL1
Mapped geneHMGCLL1
Upstream gene id
Downstream gene id
SNP gene ids54511
Upstream gene distance
Downstream gene distance
SNP risk allelers11754509-G
SNPsrs11754509
Merged0
SNP id current11754509
Contextintergenic_variant
Intergenic0
Allele frequency0.013
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Urinary free dopamine: creatinine)
Or beta0.03
%95 Ci[NR] unit increase
PlatformIllumina [899892]
CNVN
Mapped traiturinary metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005116
Study accessionGCST001762