Human SNP ID | rs11754288 |
---|---|
Human chromosome | chr6 |
Human SNP position | 25776721 |
Pig chromosome | chr7 |
Pig SNP position | 21815293 |
PubMed ID | 21943158 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21943158 |
Study | Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits. |
Disease/Trait | Cardiovascular disease risk factors |
Initial sample | 11,683 European ancestry individuals |
Replication sample | NA |
Region | 6p22.2 |
Chromosome id | chr6 |
Chromosome position | 25776721 |
Reported gene | SLC17A4 |
Mapped gene | SLC17A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10050 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11754288-A |
SNPs | rs11754288 |
Merged | 0 |
SNP id current | 11754288 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.43 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | (UA) |
Or beta | 0.084 |
%95 Ci | [0.057-0.111] umol/l decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | uric acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004761 |
Study accession | GCST001247 |
PubMed ID | 24816252 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24816252 |
Study | An atlas of genetic influences on human blood metabolites. |
Disease/Trait | Blood metabolite levels |
Initial sample | 7,824 European ancestry individuals |
Replication sample | NA |
Region | 6p22.2 |
Chromosome id | chr6 |
Chromosome position | 25776721 |
Reported gene | SLC17A3 |
Mapped gene | SLC17A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10050 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11754288-A |
SNPs | rs11754288 |
Merged | 0 |
SNP id current | 11754288 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.44 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | (X-11469) |
Or beta | 0.043 |
%95 Ci | [0.031-0.055] unit increase |
Platform | Affymetrix, Illumina [2100000] (imputed) |
CNV | N |
Mapped trait | blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002443 |