SNP Detail For rs11745890
1.Mapping Information
Human SNP ID rs11745890
Human chromosome chr5
Human SNP position 99380064
Pig chromosome chr2
Pig SNP position 109448571
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region5q21.1
Chromosome idchr5
Chromosome position99380064
Reported geneNR
Mapped geneLOC102724810 - LOC100652833
Upstream gene id102724810
Downstream gene id100652833
SNP gene ids
Upstream gene distance376128
Downstream gene distance141950
SNP risk allelers11745890-C
SNPsrs11745890
Merged0
SNP id current11745890
Contextintergenic_variant
Intergenic1
Allele frequency0.0301678793134195
P value0.000004
Pvalue mlog5.39794000867203
P value text(IGP38)
Or beta0.5502
%95 Ci[0.32-0.78] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848