Human SNP ID | rs11745890 |
---|---|
Human chromosome | chr5 |
Human SNP position | 99380064 |
Pig chromosome | chr2 |
Pig SNP position | 109448571 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 5q21.1 |
Chromosome id | chr5 |
Chromosome position | 99380064 |
Reported gene | NR |
Mapped gene | LOC102724810 - LOC100652833 |
Upstream gene id | 102724810 |
Downstream gene id | 100652833 |
SNP gene ids | |
Upstream gene distance | 376128 |
Downstream gene distance | 141950 |
SNP risk allele | rs11745890-C |
SNPs | rs11745890 |
Merged | 0 |
SNP id current | 11745890 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.0301678793134195 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (IGP38) |
Or beta | 0.5502 |
%95 Ci | [0.32-0.78] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |