Human SNP ID | rs117285774 |
---|---|
Human chromosome | chr11 |
Human SNP position | 23670881 |
Pig chromosome | chr2 |
Pig SNP position | 39154689 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 11p14.3 |
Chromosome id | chr11 |
Chromosome position | 23670881 |
Reported gene | NR |
Mapped gene | RPS2P38 - LOC105376593 |
Upstream gene id | 196188 |
Downstream gene id | 105376593 |
SNP gene ids | |
Upstream gene distance | 149642 |
Downstream gene distance | 59707 |
SNP risk allele | rs117285774-? |
SNPs | rs117285774 |
Merged | |
SNP id current | 117285774 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Native Hawaiian) |
Or beta | 1.5042 |
%95 Ci | [NR] unit increase |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |