SNP Detail For rs117285774
1.Mapping Information
Human SNP ID rs117285774
Human chromosome chr11
Human SNP position 23670881
Pig chromosome chr2
Pig SNP position 39154689
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region11p14.3
Chromosome idchr11
Chromosome position23670881
Reported geneNR
Mapped geneRPS2P38 - LOC105376593
Upstream gene id196188
Downstream gene id105376593
SNP gene ids
Upstream gene distance149642
Downstream gene distance59707
SNP risk allelers117285774-?
SNPsrs117285774
Merged
SNP id current117285774
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text(Native Hawaiian)
Or beta1.5042
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956