SNP Detail For rs11725509
1.Mapping Information
Human SNP ID rs11725509
Human chromosome chr4
Human SNP position 148390576
Pig chromosome chr8
Pig SNP position 85396515
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region4q31.23
Chromosome idchr4
Chromosome position148390576
Reported geneNR3C2
Mapped geneNR3C2
Upstream gene id
Downstream gene id
SNP gene ids4306
Upstream gene distance
Downstream gene distance
SNP risk allelers11725509-A
SNPsrs11725509
Merged0
SNP id current11725509
Contextintron_variant
Intergenic0
Allele frequency0.97
P value0.000001
Pvalue mlog6
P value text(women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521