SNP Detail For rs117167774
1.Mapping Information
Human SNP ID rs117167774
Human chromosome chr14
Human SNP position 48354682
Pig chromosome chr1
Pig SNP position 198688971
2.Annotation Information
PubMed ID26030696
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26030696
StudyA Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.
Disease/TraitEmphysema imaging phenotypes
Initial sample5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls
Replication sampleNA
Region14q21.3
Chromosome idchr14
Chromosome position48354682
Reported geneLOC100506433
Mapped geneLOC105370482 - LOC105370483
Upstream gene id105370482
Downstream gene id105370483
SNP gene ids
Upstream gene distance101529
Downstream gene distance45729
SNP risk allelers117167774-T
SNPsrs117167774
Merged
SNP id current117167774
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text(%LAA-950, All)
Or beta0.47
%95 Ci[0.019-0.921] unit increase
PlatformIllumina [7600000] (imputed)
CNVN
Mapped traitemphysema imaging measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007626
Study accessionGCST002945